(cad/klayout) Updated 0.29.10 to 0.29.11
0.29.11 (2025-01-17):
* Bug: %GITHUB%/issues/1948 Crash by instantiate a Cell in a Library-Cell
* Bug: %GITHUB%/issues/1953 Callback_impl & coerce_parameters_impl parameter display issue
* Bug: %GITHUB%/issues/1955 Locked layout after certain operations
* Bug: %GITHUB%/issues/1959 Color corrections not working properly for images with color mapping / float values
* Enhancement: %GITHUB%/issues/1963 Add lock to Cell
* Bug: %GITHUB%/issues/1967 Possible net tracer bug in point-and-click net trace
* Enhancement: %GITHUB%/issues/1971 Suppress warnings written with tl::warn from Python
Update to 0.116
Upstream changes:
0.116 2024-12-30 16:13:39-05:00 America/New_York
- do not leave Getopt::Long configuration in an altered state after
getting options
0.115 2024-11-07 18:00:02+00:00 Europe/Dublin
- cope with the user forgetting the first argument, generally "%c %o",
to `describe_options`, by assuming they meant that value exactly
Update to 0.15
Upstream changes:
0.15
- Doc improvements.
- Avoid win32_fmode() when perl is built by UCRT compiler, as UCRT changes struct _iobuf.
(Affects MSWin32 only.)
Update to 6.96
Upstream changes:
6.96 2024-12-04
- Time zone fixes
There were no new timezone fixes on 2024-06-01 or 2024-09-01, so no
release made then.
Newest zoneinfo data (tzdata 2024b).
cad/librecad: Update to 2.2.0
This is a tiny update, from rc2 to the final release.
- drop upstream patch now in upstream
- drop fix for /usr to @PREFIX@ because upstream changed how they
find paths, it clearly doesn't apply, and it looks like upstream's
approach is ok
cad/librecad: Regularize and tweak language feature cleanup
- rearrange the variables into canonical order and group all
LANGUAGES stuff together. NFCI
- fix USE_LANGUAGES
- read enough upstream makefiles to figure out that both c++11 and
gnu++11 appear and where they from
- remove -std=c++11 as well as gnu++11
- require and force gnu++14, on the theory that it should be ok with
both gnu++11 (librecad) and c++14 (boost)
Build tests and runs on on NetBSD 10 amd64, gcc 10.
(handed off to me for tweaking in private mail)
ncdc: update to 1.24.1.
1.24.1 - 2024-07-18
- Fix compilation with -Wincompatible-pointer-types
1.24 - 2024-01-07
- Add 'u' key to file browser to sort non-local files first
- Fix active mode sometimes breaking on FreeBSD
- Fix possible crash on aarch64 when connected to an ADC hub
- Slightly improve ADC protocol compliance
- Slightly improve C compiler compatibility
1.23.1 - 2022-09-27
- Fix buffer overflow on connections tab for incoming IPv6 connections in handshake phase
math/R: on NetBSD, disable the ntohl / htonl dance.
These are already declared at the point in the code it's used,
and on macppc it causes build failure, and probably also on other
big-endian targets.
There still appears to be rpath issues, libR.so is installed in
${PREFIX}/lib/R/lib/, but that directory is not in rpath of other
libs or executables, so this does not install, at least not on
macppc at the moment.
Bump PKGREVISION.
biology/subread: Alignment, quantification, SNPs
The Subread package comprises a suite of software programs for
processing next-gen sequencing read data including:
Subread: a general-purpose read aligner which can align both
genomic DNA-seq and RNA-seq reads. It can also be used to
discover genomic mutations including short indels and structural
variants.
Subjunc: a read aligner developed for aligning RNA-seq reads
and for the detection of exon-exon junctions. Gene fusion events
can be detected as well.
featureCounts: a software program developed for counting
reads to genomic features such as genes, exons, promoters and
genomic bins.
Sublong: a long-read aligner that is designed based on
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